PIPs - Human Protein-Protein Interaction Prediction | Tool name | PIPs - Human Protein-Protein Interaction Prediction |
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| URL | http://www.compbio.dundee.ac.uk/www-pips |
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| Important features | A database specific to human PPIs. Predicts interaction based on co-expression, domain/interfaces/sites, co-localization and co-occurrence of PTMs. |
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| Citations | McDowall MD, Scott MS, Barton GJ. PIPs: human protein-protein interaction prediction database. Nucleic Acids Res. 2009 Jan;37(Database issue):D651-6. Epub 2008 Nov 6. PubMed PMID: 18988626; PubMed Central PMCID: PMC2686497. |
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Predicted PPIs based on co-expression, Predicted PPIs based on the domain/interfaces/sites, Predicted PPIs based on co-localization, Inferred PPIs (e.g., human PPIs inferred from mouse), Predicted PPIs based on co-occurrence of PTMs, Predict PPI network in a species by using ortholog information, PPIs and their rank based on evidence score, PPIs along with supporting evidences, Similar PPIs among species, PPIs specific to post translation modifications, PPIs for given protein sequence (BLAST search) |
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| Category | http://www.compbio.dundee.ac.uk/www-pips, A database specific to human PPIs. Predicts interaction based on co-expression, domain/interfaces/sites, co-localization and co-occurrence of PTMs., McDowall MD, Scott MS, Barton GJ. PIPs: human protein-protein interaction prediction database. Nucleic Acids Res. 2009 Jan;37(Database issue):D651-6. Epub 2008 Nov 6. PubMed PMID: 18988626; PubMed Central PMCID: PMC2686497., 2008, 100 |
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| Online/downloadable | |
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| Online | Online |
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| Downloadable | |
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| Registration required | |
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| Free | Free |
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| Paid | |
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| Working status | Functional |
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| Function | Predicted PPIs based on the protein structure |
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